Computational topology provides a tool, persistent homology, to extract quantitative descriptors from structured objects (images, graphs, point clouds, etc). These descriptors can then be involved in optimization problems, typically as a way to incorporate topological priors or to regularize machine learning models. This is usually achieved by minimizing adequate, topologically-informed losses based on these descriptors, which, in turn, naturally raises theoretical and practical questions about the possibility of optimizing such loss functions using gradient-based algorithms. This has been an active research field in the topological data analysis community over the last decade, and various techniques have been developed to enable optimization of persistence-based loss functions with gradient descent schemes. This survey presents the current state of this field, covering its theoretical foundations, the algorithmic aspects, and showcasing practical uses in several applications. It includes a detailed introduction to persistence theory and, as such, aims at being accessible to mathematicians and data scientists newcomers to the field. It is accompanied by an open-source library which implements the different approaches covered in this survey, providing a convenient playground for researchers to get familiar with the field.

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Graphcodes handle datasets that are filtered along two real-valued scale parameters.

The Sliced Wasserstein Kernel (SWK) for persistence diagrams was introduced in (Carri{è}re et al. 2017) as a powerful tool to implicitly embed persistence diagrams in a Hilbert space with reasonable distortion. This kernel is built on the intuition that the Figalli-Gigli distance-that is the partial matching distance routinely used to compare persistence diagrams-resembles the Wasserstein distance used in the optimal transport literature, and that the later could be sliced to define a positive definite kernel on the space of persistence diagrams. This efficient construction nonetheless relies on ad-hoc tweaks on the Wasserstein distance to account for the peculiar geometry of the space of persistence diagrams. In this work, we propose to revisit this idea by directly using the Figalli-Gigli distance instead of the Wasserstein one as the building block of our kernel. On the theoretical side, our sliced Figalli-Gigli kernel (SFGK) shares most of the important properties of the SWK of Carri{è}re et al., including distortion results on the induced embedding and its ease of computation, while being more faithful to the natural geometry of persistence diagrams. In particular, it can be directly used to handle infinite persistence diagrams and persistence measures. On the numerical side, we show that the SFGK performs as well as the SWK on benchmark applications.

For a given set of points, define a value called "weight" for each point in (a),

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Topological data analysis (TDA) has been used successfully in a wide array of applications, for instance in medical (Nicolau et al., 2011) or material (Hiraoka et al., 2016) sciences, computer vision (Li et al., 2014) or to classify NBA players (Lum et al., 2013).